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News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 12 weeks ago by 2.6k • written 7.4 years ago by 100k
0
votes
0
replies
120
views
News: Online course: Meta-analysis in R
Meta-Analysis Statistics R
updated 1 day ago by 43k • written 1 day ago by ★ 2.5k
0
votes
0
replies
121
views
News: Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo Individual-Based-Models Agent-Based-Models
updated 1 day ago by 43k • written 1 day ago by ★ 2.5k
0
votes
0
replies
155
views
News: Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop RNA-seq nextflow DNA-seq
updated 3 days ago by 43k • written 3 days ago by 11k
0
votes
0
replies
126
views
News: Deadline Approaching: PETs for Public Health Challenge
privacy public-health-challenge
updated 4 days ago by 43k • written 4 days ago by ▴ 380
0
votes
0
replies
157
views
News: Online course: Network Analysis in R
NetworkAnalyis R
5 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
172
views
News: Online course: Meta-analysis in R
Meta-Analysis R
updated 7 days ago by 43k • written 7 days ago by ★ 2.5k
1
vote
0
replies
118
views
News: Online Live Course: Introduction to Machine Learning in R
Rstats TScourses Rlang Rproject
updated 8 days ago by 43k • written 8 days ago by ▴ 70
2
votes
0
replies
113
views
News: Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM Rlang Rstats Rproject
updated 8 days ago by 43k • written 8 days ago by ▴ 70
2
votes
0
replies
108
views
News: Online Course Introduction to Network Analysis and Modelling
Python Network-Analysis
updated 8 days ago by 43k • written 8 days ago by ▴ 70
2
votes
0
replies
105
views
News: Course Functional Programming with R
Rstats TScourses Rproject KeepLearning Rlang
9 days ago by Transmitting Science communication ▴ 70
12
votes
2
replies
423
views
News: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop RNA-Seq DNA-Seq Illumina
9 days ago by David Langenberger 11k
2
votes
0
replies
106
views
News: Online course: Genome Annotation
Genome-Assembly RNA-seq Genome-Annotation
updated 9 days ago by 43k • written 9 days ago by ★ 2.5k
0
votes
0
replies
105
views
News: Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics vegan R
updated 10 days ago by 43k • written 11 days ago by ★ 2.5k
1
vote
0
replies
160
views
News: Landscape Genomics course in Switzerland
LFMM Landscape-Genomics Sambada R Local-Adaptation
updated 10 days ago by 43k • written 13 days ago by ★ 2.5k
8
votes
2
replies
750
views
News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
14 days ago by David Langenberger 11k
0
votes
0
replies
129
views
News: Online course: Food Traceability Using Genomic Tools
Nanopore Genomic-Tools Illumina Food-Traceability
updated 15 days ago by 43k • written 16 days ago by ★ 2.5k
0
votes
0
replies
137
views
News: Online course: Eukaryotic Metabarcoding
Metabarcoding Biodiversity R eDNA
18 days ago by carlopecoraro2 ★ 2.5k
3
votes
2
replies
538
views
News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
21 days ago by Johannes W. Dietrich • 0
0
votes
0
replies
186
views
News: Online course: Reproducibility in Bioinformatics
Singularity Version-Control Docker Containers
updated 21 days ago by 43k • written 21 days ago by ★ 2.5k
0
votes
0
replies
153
views
News: Online course: Analysis of Prokaryotic Pangenomes (Last call)
Prokaryotic Bacterial-Genomics Pangenomics
updated 21 days ago by 43k • written 21 days ago by ★ 2.5k
0
votes
0
replies
151
views
News: Online course: Introduction to GWAS
GWAS Imputation StatisticalPower
26 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
152
views
News: Online course: Adaptation Genomics
StructuralVariants Selection AdaptationGenomics PopulationStructure
4 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
144
views
News: Online course: Analysis of Prokaryotic Pangenomes
BacterialGenomics Pangenomics
4 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
221
views
News: Online course on Genome Assembly and Annotation (1 seat left)
Galaxy GenomeAssembly GenomeAnnotation
5 weeks ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
159
views
News: NCBI's ClinVar now accepting somatic variation data
variation NCBI somatic-variants ClinVar
5 weeks ago by PeterC_NCBI ▴ 410
1
vote
1
reply
261
views
News: EMBL Course Hands-on course for sample preparation and data analysis in proteomics
EMBLProteomics
updated 5 weeks ago by • 0 • written 10 weeks ago by ▴ 10
1
vote
0
replies
178
views
News: Learn how to create robust bioinformatics pipelines for reproducible and comparable NGS analyses
nextflow pipeline workshop
5 weeks ago by David Langenberger 11k
0
votes
0
replies
144
views
News: Online course: Genome Assembly and Annotation - 3 seats left
Genome-Assembly Galaxy Genome-Annotation
updated 5 weeks ago by 43k • written 5 weeks ago by ★ 2.5k
0
votes
0
replies
141
views
News: Call for abstract: Quest for Orthologs meeting in Montreal
conference phylogeny comparativegenomics orthology evolution
5 weeks ago by sina.majidian ▴ 20
1
vote
0
replies
146
views
News: shournal: A Tool for Bioinformaticians to Boost Research Reproducibility
reproducability terminal bash
6 weeks ago by David Langenberger 11k
1
vote
1
reply
184
views
News: Integrated Genome Browser (IGB) Office Hours
Integrated-Genome-Browser IGB
updated 6 weeks ago by 43k • written 6 weeks ago by • 0
0
votes
0
replies
175
views
News: Online course: Network Analysis in Systems Biology with R/Bioconductor
R RNA-seq Network-Analysis Bioconductor Systems-Biology
updated 6 weeks ago by 43k • written 6 weeks ago by ★ 2.5k
0
votes
0
replies
206
views
News: The 2024 Canadian Bioinformatics Workshops are here!
CBW workshop training
7 weeks ago by bioinformatics.ca • 0
0
votes
0
replies
165
views
News: Live online course Data Manipulation with R Tidyverse, 3 and 5 of April
R manipulation tidyverse data
7 weeks ago by Sole • 0
0
votes
0
replies
184
views
News: Online course: Reproducibility in Bioinformatics
Docker Singularity WorkflowManagementSystems Reproducibility
7 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
237
views
News: Online course: Genome Assembly Using Oxford Nanopore Sequencing - 4 seats remaining
GenomeAssembly Nanopore longreads
7 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
216
views
News: Webinar about scRNA-seq cell type prediction
scRNAseq
updated 8 weeks ago by 141k • written 8 weeks ago by • 0
0
votes
0
replies
227
views
News: Online course: Spatial Omics in R/Bioconductor
R Spatial-Omics Bioconductor tidyverse transcriptomics
updated 8 weeks ago by 43k • written 8 weeks ago by ★ 2.5k
0
votes
0
replies
194
views
News: Online course: Model-Based Demographic Inference from Population Genomics
Demographic-Inference Population-Genomics Demographic-Models
updated 8 weeks ago by 43k • written 8 weeks ago by ★ 2.5k
0
votes
0
replies
160
views
News: Online course: R/Bioconductor for Mass Spectrometry and Proteomics
R Proteomics Bioconductor Mass-Spectrometry
updated 9 weeks ago by 43k • written 9 weeks ago by ★ 2.5k
0
votes
0
replies
174
views
News: Virtual Workshops with the UConn Computational Biology Core
Workshop genomics
updated 9 weeks ago by 141k • written 9 weeks ago by ▴ 10
0
votes
0
replies
167
views
News: NGS Data Analysis Courses for Absolute Beginners
NGS DNAseq RNAseq singlecellsequencing DataAnalysis
9 weeks ago by David Langenberger 11k
0
votes
0
replies
184
views
News: Online course: Genome Assembly and Annotation
Annotation Genome-Assembly Nanopore Pacbio
updated 9 weeks ago by 43k • written 9 weeks ago by ★ 2.5k
0
votes
0
replies
162
views
News: Online course: Computation Tumor Evolution
R Cancer-Genomics Tumor-Evolution Genomics
updated 10 weeks ago by 43k • written 10 weeks ago by ★ 2.5k
0
votes
0
replies
162
views
News: Course live online Intro Bayesian Analyses, March 4-8, 2024
R python bayesian
10 weeks ago by Sole • 0
0
votes
1
reply
923
views
News: FINAL CALL: RNA-Seq Data Analysis Workshop (March 11 - 14, 2024 in Berlin, Germany)
NGS RNA-Seq Workshop
10 weeks ago by David Langenberger 11k
0
votes
0
replies
209
views
News: Online course : Meta-Analysis in R
R Meta-Analysis Statistics
updated 10 weeks ago by 43k • written 10 weeks ago by ★ 2.5k
1
vote
0
replies
178
views
News: Cellosaurus release 48 is available
cell-line biocuration cellosaurus knowledgebase
11 weeks ago by Amos Bairoch ▴ 120
0
votes
0
replies
220
views
News: Online course: Genome Assembly Using Oxford Nanopore Sequencing
Genome-Assembly Nanopore
updated 11 weeks ago by 43k • written 11 weeks ago by ★ 2.5k
1,000 results • Page 1 of 20
Recent Votes
Comment: Load a full GFF3 into annotation track using arrow (Apollo)
Answer: ClusterProfiler enrichKEGG – remove organism name in plots?
Cheat Sheet For One-Based Vs Zero-Based Coordinate Systems
Cheat Sheet For One-Based Vs Zero-Based Coordinate Systems
Answer: Illumina Read Stitching
Answer: Problem with Sniffles pipeline and SV calling help
Illumina reads preprocessing best practice for snp calling applications
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Scholar to damian.szk ▴ 70
Popular Question to alphaflylizard • 0
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Recent Replies
Answer: Cellranger count error: Input FASTQ file ended prematurely by bp22 ▴ 60
Dear all, The reason for the error was due to the index (I1) fastq files, for example `SI-GA-A1_1_S1_L001_I1_001.fastq.gz` having a lo…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor by Ram 43k
Your tutorial required `sudo` and thus is not doable for a majority of people. Any alternative to `sudo snap`?
Comment: Should I apply doublet detection for each pool seperately? by Ram 43k
Do not delete posts that have received feedback,
Comment: QC exclusion of A/T or G/C alleles to avoid strand issues by _quantum_girl_ ▴ 10
They aren't merging any datasets. Just for reference the paper is this: https://www.nature.com/articles/s41380-022-01674-9#MOESM1. Citing: …
Comment: RNA seq differential expression analysis by BioinfGuru ★ 1.7k
https://help.galaxyproject.org/
Answer: RNA seq differential expression analysis by Mohamed Abderrahmane ▴ 10
The tool RSEM, which performs transcript quantification for RNA-Seq data, provides FPKM.
Comment: Illumina reads preprocessing best practice for snp calling applications by Enrique • 0
Hi! I'm still interested in the step that you use for the SNP calling. Did you use `trimmomatic` or another tool for trimming before mappin…
Comment: Could you please assist in identifying this cluster? by ATpoint 81k
The information do not suffice. Please show plots and identified marker genes. Also, make sure it is not a trash cluster with low number of…
Comment: Free/open source 23andme-like analysis by joe ▴ 510
Thank you, I added 'accurate' now ;) I'm surprised to find out that there isn't some tool like multiqc that just summarizes all this infor…
Comment: Memory usage of picard Samsort by ATpoint 81k
Guys, just use `samtools sort` which won't get you into trouble with any of that.
Comment: Ciriquant not configuring hisat2 indexed files by Carlo Yague 8.6k
I don't know for sure, but I think that decreasing the amount of threads (1 or 2 instead of 4) will decrease the memory requirements of the…
Answer: Memory usage of picard Samsort by tamas.malkocs • 0
For me, setting `TMP_DIR` (`--TMP_DIR /home/tmp`) didn't work in picard 2.21.1. What solved the issue was setting the environmental variabl…
Answer: Plink merge errors. by Dinmukhamed • 0
I found answer https://www.biostars.org/p/101191/.
Comment: Ciriquant not configuring hisat2 indexed files by Atul K. • 0
it worked. Thank you. Now my terminal is crashing, seems 16gb of RAM and 4 cores isn't enough. Can you suggest something?
Comment: Adding CB tag to bam file by Maria • 0
I checked Picard ```AddOrReplaceReadsGroups``` and ```AddOATag```. Is that what you're referring to?
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