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1,000 results • Page 2 of 20
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3
votes
3
replies
905
views
Forum: Importance of Data Structures for Bioinformatics?
data-structures
updated 7 months ago by 43k • written 7 months ago by • 0
19
votes
14
replies
2.1k
views
Forum: What is the amount of sequencing data produced annually?
data research sequencing
updated 7 months ago by 22k • written 7 months ago by ▴ 70
19
votes
10
replies
1.5k
views
Forum: Pain points using commercial clouds
gpt tinybio
updated 7 months ago by ▴ 70 • written 7 months ago by ▴ 840
9
votes
6
replies
1.9k
views
6 follow
Forum: GTF files from Ensembl Releases 105 and 106 unsorted
Ensembl bug GTF
updated 7 months ago by 82k • written 17 months ago by ▴ 30
3
votes
2
replies
619
views
Forum: How to contribute to the next edition of Biostars Handbook
handbook
updated 7 months ago by 43k • written 7 months ago by ▴ 20
3
votes
6
replies
1.4k
views
6 follow
Forum: Is Bioinformatics a Professional Degree?
career degree
7 months ago by anasjamshed ▴ 120
2
votes
5
replies
948
views
6 follow
Forum: Biostar as a next generation version
meta mobile-app
updated 6 months ago by 43k • written 7 months ago by • 0
2
votes
9
replies
1.2k
views
Forum: open source projects looking for contributors
open-source
updated 7 months ago by ▴ 70 • written 7 months ago by ▴ 20
0
votes
0
replies
535
views
Forum: Recruiters: what do you expect on a junior bioinformatician?
career skills
updated 8 months ago by 43k • written 8 months ago by ▴ 20
3
votes
4
replies
1.4k
views
Forum: Discussion: Uploading terabytes of data to NCBI SRA
NCBI WGS archiving servers remote
updated 8 months ago by 141k • written 8 months ago by ▴ 130
0
votes
0
replies
566
views
Forum: I have a Master's and little experience in Bioinformatics - what would be the next best step?
career
updated 8 months ago by 43k • written 8 months ago by ▴ 10
1
vote
3
replies
772
views
Forum: Spaceranger missing spatial coordinates [Discussion]
Visium
updated 8 months ago by 141k • written 8 months ago by ▴ 550
11
votes
8
replies
1.4k
views
6 follow
Forum: How to write a review article in bioinformatics
article review
updated 7 months ago by 43k • written 8 months ago by ▴ 10
364
votes
58
replies
69k
views
44 follow
Forum: Recommend Your Favorite Bioinformatics Books
education books
updated 6 months ago by 43k • written 14.1 years ago by 100k
1
vote
2
replies
18k
views
Forum: Would you rather analyze a dataset with a strong, non-collinear batch effect, or a weak, collinear batch effect.
collinear latent batch-effect variable GLM
9 months ago by LauferVA 4.2k
0
votes
3
replies
3.8k
views
10 follow
Forum: Discussion question: Cutoff for SNP phylogeny
Phylogenetics SNP
written 17 months ago by ▴ 120
2
votes
3
replies
786
views
Forum: Purely analytic or in silico manuscripts that have significantly improved biological understanding
dry-lab
updated 9 months ago by 141k • written 9 months ago by 4.2k
0
votes
2
replies
1.3k
views
Forum: [Detailed Question] How to Normalize of Metagenomics Gene Abundances (with HMMs models)
normalization
updated 10 months ago by 10k • written 10 months ago by • 0
33
votes
23
replies
4.1k
views
8 follow
Forum: Is there a file format better suited for the era of pangenomics than the .vcf? What are its attributes?
VCF file-format genomics
updated 10 months ago by 22k • written 10 months ago by 4.2k
7
votes
8
replies
1.9k
views
Forum: Would solving many Rosalind problems show your ability for this field in job-wise?
rosalind career
10 months ago by K • 0
2
votes
3
replies
860
views
Forum: Mapping a predicted sequence to a genome
predicted map alignment sequence
updated 10 months ago by ★ 27k • written 10 months ago by • 0
0
votes
0
replies
442
views
Forum: Recommendation sought for differential exon usage of a single gene
splicing differential-exon-usage
updated 10 months ago by 43k • written 10 months ago by ▴ 10
7
votes
4
replies
1.1k
views
Forum: [Meta] Use of AI
AI Artificial-Intelligence meta ChatGPT
updated 10 months ago by 43k • written 10 months ago by 4.2k
2
votes
2
replies
597
views
Forum: Colleges
Colleges india universities
updated 10 months ago by 43k • written 10 months ago by • 0
19
votes
15
replies
2.0k
views
6 follow
Forum: Cross out line in Biostars
meta
updated 11 months ago by 43k • written 5.9 years ago by 5.3k
121
votes
33
replies
39k
views
24 follow
Forum: Where To Look For Quality Bioinformatics Short Courses And Workshops?
Courses
updated 11 months ago by ★ 2.5k • written 10.7 years ago by 11k
103
votes
42
replies
31k
views
34 follow
Forum: List of cloud genomics companies
cloud-genomics
updated 16 days ago by 22k • written 10.4 years ago by ★ 3.6k
26
votes
12
replies
7.5k
views
6 follow
Forum: Mapping God Found ‘Scientifically Dishonest’ By Anonymous Peer Reviewers
ngs
updated 11 months ago by ▴ 10 • written 10.5 years ago by ▴ 50
0
votes
2
replies
766
views
Forum: How to start in bioinformatics?
career
updated 11 months ago by 43k • written 12 months ago by • 0
4
votes
5
replies
1.4k
views
Forum: I'm looking for a mentor in Bioinformatics
mentor teaching
updated 10 weeks ago by • 0 • written 12 months ago by • 0
12
votes
5
replies
2.0k
views
6 follow
Forum: Bioinformatics opportunities in Europe?
career
updated 12 months ago by ▴ 40 • written 12 months ago by • 0
19
votes
14
replies
2.0k
views
7 follow
Forum: What's the general view on point & click bioinformatics for routine analyses?
ngs RNA-Seq next-gen-sequencing
12 months ago by Simon ▴ 40
0
votes
0
replies
7.0k
views
Forum: Optimal approach for variant calling with 3 diluted germline sample in one sequencing - Capture Sequencing
germline Calling Variant Capture Sequencing
12 months ago by Alexandre Eeckhoutte • 0
11
votes
11
replies
1.8k
views
7 follow
Forum: Any tips in landing a bioinformatic job?
Spain R
updated 12 months ago by 4.2k • written 13 months ago by ▴ 30
4
votes
2
replies
696
views
Forum: advice on course selection for a bioinformatics career.
career
updated 13 months ago by 100k • written 13 months ago by • 0
0
votes
1
reply
534
views
Forum: Graduate in molecular biology and genetics
biology genetics Molecular
updated 13 months ago by 141k • written 13 months ago by • 0
4
votes
1
reply
786
views
Forum: Open problems in genomics 2023
genomics pangenomics
updated 13 months ago by 141k • written 13 months ago by 6.4k
5
votes
3
replies
920
views
Forum: Someone posted the same question to StackOverflow and Biostars. The results will blow your mind.
meta
updated 13 months ago by 21k • written 13 months ago by ▴ 70
1
vote
0
replies
470
views
Forum: Penetrance versus heritability
penetrance heritability
13 months ago by tacrolimus ▴ 140
10
votes
15
replies
2.1k
views
Forum: How should reference genome fasta files be distributed by UCSC?
reference-genome fasta freeze ucsc-genome-browser
updated 10 months ago by 22k • written 14 months ago by ★ 1.6k
8
votes
4
replies
972
views
Forum: Implementing FAIR data principles to a bioinformatics lab
data
updated 14 months ago by 22k • written 14 months ago by ★ 1.5k
0
votes
0
replies
452
views
Forum: NGSrich - hg38
Coverage NGSrich
14 months ago by RK • 0
5
votes
5
replies
2.2k
views
Forum: Bioinformatics - how to start?
molecular-biology
updated 14 months ago by ★ 27k • written 14 months ago by • 0
8
votes
8
replies
1.8k
views
7 follow
Forum: A Computer Scientist who wants to start Bioinformatics
computer-science books resources ngs
updated 15 months ago by ▴ 10 • written 16 months ago by • 0
7
votes
3
replies
1.1k
views
Forum: Find a research paper for reproducing the results
research paper
updated 15 months ago by 141k • written 15 months ago by ★ 2.6k
1
vote
1
reply
789
views
Forum: Gene ontology vs Gene set enrichment
set enrichment GSEA ontology Gene analysis gene
updated 16 months ago by ★ 4.3k • written 16 months ago by • 0
6
votes
12
replies
2.1k
views
Forum: How to decide when to have local hardware vs cloud computing?
hardware computational-resources cloud
16 months ago by Lluís R. ★ 1.2k
15
votes
11
replies
2.7k
views
7 follow
Forum: BioStars and ChatGPT
ChatGPT Meta GPT
updated 12 months ago by ▴ 590 • written 16 months ago by ▴ 350
18
votes
10
replies
2.4k
views
7 follow
Forum: Add artificial intelligence training related disclaimers to your profile
licensing AI
updated 16 months ago by 54k • written 16 months ago by 100k
7
votes
2
replies
890
views
Forum: Improvement of Wikipedia articles with bioinformatic subjects
Wikipedia Bioinformatics
15 months ago by Matthias Zepper 4.5k
1,000 results • Page 2 of 20
Recent Votes
Comment: alignment result
Comment: clustalo - align milions of short seq, memory issue
Answer: clustalo - align milions of short seq, memory issue
Comment: downloading genomes in fasta format from accession ids
Comment: PCA plot (Suggestions Needed)
Answer: PCA plot (Suggestions Needed)
PCA plot (Suggestions Needed)
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Recent Replies
Comment: To get p-values for the TPM by VITALA • 0
yes i want what rsem does and i did try with prior-enhanced option/pRSEM, but i think pRSEM is for chipseq data
Comment: alignment result by ahmad.sajad4541 • 0
Thank you so much. Should i proceed for annotation step?
Comment: PCA plot (Suggestions Needed) by swbarnes2 14k
The code you already posted in the bioconductor board had simulated data, and the PCA image is the same.
Answer: Network Alignment by Scooter ▴ 280
Unfortunately, it's not working for me either, and the web site doesn't exist anymore. You might try reaching out to the authors, but I kn…
Answer: How could I generate a gi_taxid_nucl.dmp file similar to the one previously host by ZhangYuanfeng • 0
JUST GIVE THE ANSWER! Here is the solution: ```bash aria2c -c -s 4 -j 4 \ https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/accession2taxid/pd…
Comment: PCA plot (Suggestions Needed) by Aaliya ▴ 10
I have actually used DESeq2 data.
Comment: Why cd-hit-est not work when sequence identity threshold<0.95？ by Dateline • 0
So, why? I have 18GB of data, and when -c=0.95, the run ends in about two days, while when -c=0.9, it has been three days and only a little…
Answer: Heatmap and rna-seq by Kevin Blighe 87k
Hi, you can take the list of GSEA pathways and then use these via GSVA (https://github.com/rcastelo/GSVA) to create a heatmap. You hav…
Comment: Clustering of DAVID gene enrichment results from gene expression studies by Kevin Blighe 87k
You will have to elaborate on what is the error
Comment: clustalo - align milions of short seq, memory issue by emmanouil.a ▴ 120
Hi GenoMax and Mensur Dlakic, thank you for your feedback. I'm changing approach in the way to work with a smaller number of seq.
Comment: Annovar using R package by Pierre Lindenbaum 161k
duplicate of your previous question: https://www.biostars.org/p/9592646/ why using R when there are shell-based tools like VEP ? slivar , …
Comment: Trouble with Pilon installation by Lissa Cruz Saavedra • 0
Hi I am trying to install the software but I didn't find the way to clone from github. Could you help me with the pipeline of instruction…
Comment: Adding CB tag to bam file by swbarnes2 14k
I think both these programs are just adding the same tag to every line. I don't think either cares whether it's called RG or CB
Comment: PCA plot (Suggestions Needed) by swbarnes2 14k
Even if this was real data, the tiny numbers for the PC1 and PC2 indicate that the differences between the samples are all absolutely tiny.…
Comment: Creating Synthetic Sequences for a ML Model by biochugs • 0
Thanks for the input. I'll continue to think of more ideas that may be achievable.
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