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116,483 results • Page
1 of 2330
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0
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9
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Chemical structure validation
structure
cap
validation
metabolite
6 minutes ago by
Rodolfo Adrián
• 0
2
votes
6
replies
849
views
Cellranger count error: Input FASTQ file ended prematurely
scRNA-seq
Cellranger
STARsolo
10X
updated 10 minutes ago by
GenoMax
141k • written 8 months ago by
bp22
▴ 70
0
votes
1
reply
15
views
Downloading the raw microarray data from GEO
.gpr
microarray
.CEL
updated just now by
GenoMax
141k • written 30 minutes ago by
bioyas
▴ 10
0
votes
0
replies
33
views
Copy number variation plot
Copy-number-variation
genomics
updated 1 hour ago by
Ram
43k • written 1 hour ago by
Emmi
• 0
795
votes
167
replies
141k
views
109 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 12 weeks ago by
Biostar
2.6k • written 7.4 years ago by
Istvan Albert
100k
0
votes
5
replies
430
views
RNA seq differential expression analysis
RNA-seq
normalization
updated 1 hour ago by
BioinfGuru
★ 1.7k • written 1 day ago by
rrehimi
• 0
0
votes
0
replies
32
views
SNP calling with ANGSD and ngsLD. How many SNPs?
lcwgs
ngsTools
ANGSD
genomics
2 hours ago by
DanielEB_fisk
▴ 20
0
votes
1
reply
99
views
Could you please assist in identifying this cluster?
single-cell
updated 1 hour ago by
Ram
43k • written 2 hours ago by
Kazo
• 0
4
votes
9
replies
2.5k
views
Tool:
CANEapp, a user-friendly application for automated next generation transcriptomic data analysis
RNA-Seq
written 8.2 years ago by
dvelmeshev
• 0
2
votes
7
replies
5.1k
views
6 follow
Memory usage of picard Samsort
Picard
SortSam
updated 3 hours ago by
ATpoint
81k • written 7.1 years ago by
boymin2020
▴ 80
1
vote
2
replies
84
views
Tutorial:
Installing/switching between versions of R/Rstudio/Bioconductor
Bioconductor
R
Rstudio
3 minutes ago by
BioinfGuru
★ 1.7k
1
vote
1
reply
284
views
Plink merge errors.
cygwin64
bed
PLINK
5 hours ago by
Dinmukhamed
• 0
0
votes
0
replies
59
views
Conversion to tree format
PLINK
bed
Figtree
SplitsTree
updated 1 hour ago by
Ram
43k • written 5 hours ago by
Dinmukhamed
• 0
0
votes
0
replies
63
views
miRDeep2: How to get the read counts
mirdeep2
7 hours ago by
Atul K.
• 0
1
vote
2
replies
307
views
Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (without Blat)
mapping
updated 9 hours ago by
Pierre Lindenbaum
161k • written 20 hours ago by
rahu
• 0
0
votes
0
replies
79
views
Lncipedia GTF file error
Proteomics
updated 1 hour ago by
Ram
43k • written 9 hours ago by
atharvakarkare14
▴ 10
7
votes
3
replies
2.7k
views
Tutorial:
Prediction of Ribosomal RNA Genes Using RNAmmer Software
Annotation
rRNA
RNAmmer
Genome
updated 9 hours ago by
colindaven
6.3k • written 15 months ago by
Dr.Animo
▴ 130
3
votes
2
replies
220
views
Free/open source 23andme-like analysis
SNPs
genomics
NGS
VCF
3 hours ago by
joe
▴ 510
0
votes
2
replies
384
views
How to get the reference panel for UKBB
UKBB
GWAS
clump
16 hours ago by
航太郎
• 0
0
votes
2
replies
261
views
Adding CB tag to bam file
samtools
bam
8 hours ago by
Maria
• 0
11
votes
12
replies
752
views
Downloaded pdb's on rcsb.org
rcsb
pdb
updated 18 hours ago by
Ram
43k • written 1 day ago by
iamsmor
• 0
0
votes
0
replies
98
views
create genewise sync file in popoolation
popoolation
updated 20 hours ago by
GenoMax
141k • written 21 hours ago by
N.Y.Wiyana-Hewage
• 0
0
votes
2
replies
246
views
python file for coding potential calculator
cpc2.py
13 hours ago by
Ashok
• 0
0
votes
2
replies
241
views
error in coding potential calculator CPC2
cpc
CPC2
coding-potential
13 hours ago by
Ashok
• 0
0
votes
2
replies
265
views
miRNAs quantification using mirdeep2 tool
differential-expression
mirdeep2
miRNA
11 hours ago by
Ashok
• 0
5
votes
2
replies
356
views
How to compare the quality of assemblies
nextdenovo
assembly
hifiasm
pacbio
updated 1 day ago by
shelkmike
★ 1.2k • written 1 day ago by
kirillkirilenko
▴ 40
0
votes
0
replies
107
views
Variant Generation Using Longshot
long-reads
variant-calling
ONT
minion
longshot
updated 1 day ago by
Ram
43k • written 1 day ago by
samuelkalandarov2002
• 0
1
vote
1
reply
267
views
Problem with Mirdeep2 and Randfold output
mirdeep2
Randfold
1 day ago by
otieno43
▴ 30
0
votes
2
replies
216
views
QC exclusion of A/T or G/C alleles to avoid strand issues
quality-control
SNV
QC
SNP
1 hour ago by
_quantum_girl_
▴ 10
0
votes
0
replies
114
views
traying to make a maf from an already annotated vcf
vcf2maf
VEP
maftools
updated 1 day ago by
Ram
43k • written 1 day ago by
Javier
• 0
1
vote
4
replies
603
views
What happened to Tombo Re-squiggle
Tombo
resquiggle
ONT
updated 1 day ago by
Ram
43k • written 3 months ago by
turcoa1
• 0
0
votes
0
replies
105
views
Pruning with plink finds a majority of SNPs in very high LD
LD
SNP
plink
pruning
1 day ago by
enferdeflame
• 0
0
votes
0
replies
115
views
Difference when using difference number of pathways score to compare between 3 groups
GSVA
Limma
22 hours ago by
Chris
▴ 260
0
votes
0
replies
121
views
News:
Online course: Meta-analysis in R
Meta-Analysis
Statistics
R
updated 1 day ago by
Ram
43k • written 1 day ago by
carlopecoraro2
★ 2.5k
1
vote
9
replies
657
views
How can I retrieve wheat lysine non-acetylated sequences from the UniProt database?
UniProt
updated 1 day ago by
Elisabeth Gasteiger
★ 2.4k • written 1 day ago by
Jacky
• 0
0
votes
1
reply
200
views
10x VDJ (TCR/BCR) BAM to fastq
TCR
VDJ
BCR
10x
updated 1 day ago by
GenoMax
141k • written 1 day ago by
predeus
★ 1.9k
0
votes
1
reply
217
views
DEseq2
RNA-seq
DESeq2
updated 1 day ago by
Ram
43k • written 1 day ago by
rrehimi
• 0
0
votes
0
replies
122
views
News:
Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo
Individual-Based-Models
Agent-Based-Models
updated 1 day ago by
Ram
43k • written 1 day ago by
carlopecoraro2
★ 2.5k
4
votes
2
replies
276
views
Assume "yes" as the answer to any prompts with bioconda
docker
container
bioconda
updated 1 day ago by
Juke34
8.5k • written 1 day ago by
njornet
▴ 20
1
vote
0
replies
122
views
Tutorial:
DNA Methylation: Sequencing Techniques
WGBS
RRBS
1 day ago by
Novogene
▴ 420
0
votes
1
reply
387
views
How to add rowLinks, rowTree in SummarizedExperiment manually.
phylogenetic-tree
microbiome
updated 1 day ago by
Ram
43k • written 19 months ago by
Muhammad
• 0
3
votes
3
replies
402
views
Korean human genome reference file
GWAS
reference
imputation
12 hours ago by
SeoGyun
• 0
3
votes
4
replies
400
views
SLURM submission problem: Indexing the Reference Genome is not done in STAR
align
RNA-Seq
linux
STAR
updated 1 day ago by
GenoMax
141k • written 1 day ago by
n_navy
• 0
0
votes
0
replies
125
views
How can I obtain the tissue or sample name alongside the Tau score in tspex?
tau-score
tspex
updated 1 day ago by
Ram
43k • written 1 day ago by
bioinfo223
▴ 10
0
votes
0
replies
136
views
How to root an unrooted tree with a known root tree?
phylogenetics
rooting
R
1 day ago by
P.
• 0
0
votes
0
replies
136
views
Issues with SnpEff Assuming Circular Chromosomes in Eukaryotic Genome Analysis
snpEff
1 day ago by
ekirsch
• 0
1
vote
1
reply
282
views
Load a full GFF3 into annotation track using arrow (Apollo)
arrow
python-apollo
Apollo
20 minutes ago by
renan.igor
• 0
1
vote
1
reply
222
views
Pediococcus acidilactici sequence analysis
BLAST
Gene-Ontology
updated 1 day ago by
Ram
43k • written 1 day ago by
anasjamshed
▴ 120
3
votes
1
reply
580
views
What is the normalization status of metabric data?
metabric
normalization
microarray
cbioportal
updated 1 day ago by
etiennedanis
▴ 20 • written 19 months ago by
DareDevil
★ 4.3k
0
votes
0
replies
138
views
filter the most significant ligand and receptors in netVisual_bubble in cell chat
cellchat
1 day ago by
synat.keam
▴ 100
116,483 results • Page
1 of 2330
Recent Votes
Answer: Cellranger count error: Input FASTQ file ended prematurely
Comment: Load a full GFF3 into annotation track using arrow (Apollo)
Answer: ClusterProfiler enrichKEGG – remove organism name in plots?
Cheat Sheet For One-Based Vs Zero-Based Coordinate Systems
Cheat Sheet For One-Based Vs Zero-Based Coordinate Systems
Answer: Illumina Read Stitching
Answer: Problem with Sniffles pipeline and SV calling help
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Rodolfo Adrián
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damian.szk
▴ 70
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alphaflylizard
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GenoMax
141k
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Recent Replies
Comment: Cellranger count error: Input FASTQ file ended prematurely
by
GenoMax
141k
That is odd. Thanks for following-up and providing an explanation.
Answer: Cellranger count error: Input FASTQ file ended prematurely
by
bp22
▴ 70
Dear all, The reason for the error was due to the index (I1) fastq files, for example `SI-GA-A1_1_S1_L001_I1_001.fastq.gz` having a lo…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor
by
Ram
43k
Your tutorial required `sudo` and thus is not doable for a majority of people. Any alternative to `sudo snap`?
Comment: Should I apply doublet detection for each pool seperately?
by
Ram
43k
Do not delete posts that have received feedback,
Comment: QC exclusion of A/T or G/C alleles to avoid strand issues
by
_quantum_girl_
▴ 10
They aren't merging any datasets. Just for reference the paper is this: https://www.nature.com/articles/s41380-022-01674-9#MOESM1. Citing: …
Comment: RNA seq differential expression analysis
by
BioinfGuru
★ 1.7k
https://help.galaxyproject.org/
Answer: RNA seq differential expression analysis
by
Mohamed Abderrahmane
▴ 10
The tool RSEM, which performs transcript quantification for RNA-Seq data, provides FPKM.
Comment: Illumina reads preprocessing best practice for snp calling applications
by
Enrique
• 0
Hi! I'm still interested in the step that you use for the SNP calling. Did you use `trimmomatic` or another tool for trimming before mappin…
Comment: Could you please assist in identifying this cluster?
by
ATpoint
81k
The information do not suffice. Please show plots and identified marker genes. Also, make sure it is not a trash cluster with low number of…
Comment: Free/open source 23andme-like analysis
by
joe
▴ 510
Thank you, I added 'accurate' now ;) I'm surprised to find out that there isn't some tool like multiqc that just summarizes all this infor…
Comment: Memory usage of picard Samsort
by
ATpoint
81k
Guys, just use `samtools sort` which won't get you into trouble with any of that.
Comment: Ciriquant not configuring hisat2 indexed files
by
Carlo Yague
8.6k
I don't know for sure, but I think that decreasing the amount of threads (1 or 2 instead of 4) will decrease the memory requirements of the…
Answer: Memory usage of picard Samsort
by
tamas.malkocs
• 0
For me, setting `TMP_DIR` (`--TMP_DIR /home/tmp`) didn't work in picard 2.21.1. What solved the issue was setting the environmental variabl…
Answer: Plink merge errors.
by
Dinmukhamed
• 0
I found answer https://www.biostars.org/p/101191/.
Comment: Ciriquant not configuring hisat2 indexed files
by
Atul K.
• 0
it worked. Thank you. Now my terminal is crashing, seems 16gb of RAM and 4 cores isn't enough. Can you suggest something?
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