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Tutorial:
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Recent Replies
Comment: biomaRt error for different R version
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Wonderful, and thanks for tagging Mike!
For those who come back for this problem, the following seemed to work for me:
Downgrading `dbply…
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From my experience using `biocontainers` base container no need to set `yes` installation is done without any command prompt, otherwise as …
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You're allocating 4 compute nodes (`#SBATCH -N 4`), but STAR can't actually make use of more than 1 compute node. You can increase the num…
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```conda install -y bioconda::packageX conda-forge::packageY``` should do what you're looking for.
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Hi GenoMax,
Thank you for your advice. I sent an email to them and have already opened an issue on Github. Let see if there is any other so…
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You can't. The data does not exist. UniProt only annotates where a lysine is know to be acetylated. There is no way that UniProt can know w…
Comment: How can I retrieve wheat lysine non-acetylated sequences from the UniProt databa
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Yes, that's what I meant.
Comment: How can I retrieve wheat lysine non-acetylated sequences from the UniProt databa
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Jacky
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I'm sorry, I didn't explain it clearly. Below are my operational steps: I enter 'Triticum aestivum' in the search box and perform a search.…
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I add these parameters;
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Thanks!
Could you please explain the DEseq2 method using Galaxy step by step?
Input files?
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Is is this one - KOREF ? There might be multiple versions. https://www.ncbi.nlm.nih.gov/bioproject/PRJNA294231/
If it is, then take that…
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The question is not quite clear? are you asking for wheat proteins in UniProtKB which contain a lysine amino-acid, where those lysine are *…
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You should provide row count (without normalization) for doing DEG analysis by relevant tools such as, edgeR or DEseq.
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Thank you.
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Hi, i have added the fastqc plots (untrimmed and trimmed). The sample was from anaerobes enriched from wastewater treatment plant, and this…
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