Closed:UCSC Isoform ID conversion
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10.0 years ago
jack ▴ 960

I want to convert the UCSC transcript IDs to the Refseq or Entrez gene/Transcript ID. I tried BioMart, but it failed.

For example I want to convert :

uc011lsn.1
uc010unu.1
uc010uoa.1
uc002bgz.2
uc001jiu.2

to the IDs like: NM_130786

Does anyone knows any tools or R package to handle this ?

RNA-Seq genomics ucsc • 1.4k views
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