Deleted:How to make circos plots using R
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2.9 years ago
Kumar ▴ 170

Hi Guys, I am looking to make a circos plot for my two csv files which includes the FST and TajimaD values at different BIN. please see the input files as an example. I am able to make a geom line plot at R but looking if I can make it in circos using R, please suggest any R script.

File 1:
METHOD  BIN TajD
TajD    44600000    -1.03446
TajD    7470000     -0.912548
TajD    281630000   -0.901296
TajD    253400000   -0.884829

File 2:

METHOD  BIN PI
PI  130005  0.000043
PI  700010  0.000365
PI  710010  0.000275
PI  1650010 0.0000576


Using the script to make geom_line plot::

ss_tajD <- read.table("population/sse.tajD", header=T)
ss_pi <- read.table("population/ss.pi", header=T)

ss.tajD<- ggplot(ss_tajD , aes(x=BIN, y=TajD, group=METHOD, color=METHOD)) +
  geom_line(size = 0.5)+ scale_color_manual(values = c("darkred"))


ss.pi <- ggplot(ss_pi, aes(x=BIN, y=PI, group=METHOD, color=METHOD)) +
  geom_line(size = 0.5)+ scale_color_manual(values = c("blue"))

figure <- ggarrange(ss.tajD, ss.pi,
                    ncol = 1, nrow = 3)
figure
Genome Circos R • 538 views
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