Looking For A Database Containing Outputs Of Clip-Seq Experiments

Question

[pietrosanto.1254532]

Hello everyone, I am currently doing some bibliographic research on rna binding structural motifs, and I can't find any database containing outputs of CLIP experiments (excluding miRNA data if possible), that is, rna sequences that bind with which RBP. Does any of you know something?

Thanks

Answer 1

[lsp03yjh]

you can try starBase. starBase integrated 111 CLIP-Seq datasets to provide various RNA-RNA and protien-RNA regulatory interactions. You can download all the RBP binding peaks from the download page.

Answer 2

[Mary]

I just happened to be looking at this handy *Seq list. There are a couple of papers there but I don't have access, so I don't know if they found a database home. You could see if those were cited by others too, perhaps.

http://liorpachter.wordpress.com/seq/