Question

Transcriptome Sequencing And Snp

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12.9 years ago

User 1330 ▴ 60

is it possible to check SNPs in 454 transcriptome data from a new organism (not known genome) ? how?

transcriptome snp • 2.5k views

ADD COMMENT • link updated 12.9 years ago by Botond Sipos ★ 1.7k • written 12.9 years ago by User 1330 ▴ 60

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Exact duplicate to this question.

ADD REPLY • link updated 4.6 years ago by Ram 43k • written 12.9 years ago by Eric Normandeau 11k

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Should be deleted? Exact duplicate to this question.

ADD REPLY • link updated 4.6 years ago by Ram 43k • written 12.9 years ago by Eric Normandeau 11k

score 3 · Answer 1 · 2011-05-17

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12.9 years ago

Botond Sipos ★ 1.7k

The DIAL pipeline is an attempt to solve this problem:

Ratan A, Zhang Y, Hayes VM, Schuster SC, Miller W. Calling SNPs without a reference sequence. BMC Bioinformatics. 2010 11:130.

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