I have 218 fastq files i.e,(109*2), each of which have files named in the format as following
SRR8224532_1.fastq , SRR8224532_2.fastq ,
SRR8224533_1.fastq , SRR8224533_2.fastq,
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.**(upto)**
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SRR8224640_1.fastq, SRR8224640_2.fastq
For each SRR accession number two fastq files.
The problem is, i want to run spades.py as follows;
spades.py -1 SRR8224532_1.fastq -2 SRR8224532_2.fastq -0 SRR8224532-out
Is it's possible to run spades.py for all 109 files (109*2) in the similar way as mentioned above?? Thank You in advance.
Please pay attention to your post formatting. Also, avoid statements in ALL CAPS, as well as statements like "please help". It might help to read these 10 points on how to discuss topics on scientific communities: https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1002202