Entering edit mode
4.9 years ago
nheb1977
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0
I need to compare 2 short protein sequences (10AA , rarely ~100AA) (to determine if they match), sort of like blastp. But I was wondering if there is much faster programs to do it. Thank you.
diamond ? not sure how it will handle those very short sequences though.
If your sequences are homologous then
blat(from Jim Kent at UCSC) would likely be the fastest solution out there.