Entering edit mode
4.9 years ago
mmaetha
▴
10
I want to create metabolic network from 16S data. So, I tried to install MMinte
~$ pip install mminte
but I got error alert.
Failed building wheel for mminte
Running setup.py clean for mminte
Running setup.py bdist_wheel for future ... done
Stored in directory: /home/usr/.cache/pip/wheels/0c/61/d2/d6b7317325828fbb39ee6ad559dbe4664d0896da4721bf379e
Running setup.py bdist_wheel for mpmath ... done
Stored in directory: /home/usr/.cache/pip/wheels/63/9d/8e/37c3f6506ed3f152733a699e92d8e0c9f5e5f01dea262f80ad
Successfully built future mpmath
Failed to build mminte
How can I solve this problem? or any tools to construct network? Thanks.
Which python version are you using?
python2.7.15 and python3.6.7
Is what you posted the full error message?
These are all message
That was important. Don't just show half of the error message.
I believe things start going wrong here:
Do
/usr/bin/blastn
and/home/maemae/.local/bin
exist? Do you have write permission there?/usr/bin/blastn don't exist. Oh! how can I do? and if I want to change to other model construction program, can you give me an advice?
So what was wrong was in the error message, all along. You could try to make sure /usr/bin/blast does exist by installing it, if you have those permissions. But a tool which expects a hardcoded path to a dependency is a tool I wouldn't trust any further. This is a bug which you should/could raise on GitHub.
I know nothing about model construction.
Thank you for your answer.
I want to create metabolic network from 16S data. So, I tried to install MMinte but I have a problem in widget3 When I run this widget I see this Error
Sorry, something went wrong creating metabolic model using ModelSEED. Exeption; Call get_token() to obtain an authentication token