is there any other value for evaluating Sequence Mapping??

Question

[9521ljh]

I only find MappingQuality value.

is there no other value to evaluate how well seqeunces are mapped?

i want to know what kinds of measurement do we need to conclude mapping is Good.

Answer 1

[Fabio Marroni]

You might try reading some of the papers dealing with assessment of short read mapping accuracy. I paste two links below, but I bet you can find many more:

https://www.sciencedirect.com/science/article/pii/S0888754317300204?via%3Dihub

https://academic.oup.com/bioinformatics/article/28/18/i349/249968