Entering edit mode
5.0 years ago
Mbillah
▴
140
We used the MAKER pipeline to predict genes from our recently assembled genome.
After filtering we tried to annotate our predicted genes with InterProScan.
Now we want to count how many genes the InterProScan has annotated?
simply count the number of predicted gene IDs in the interpro output file
You could give a try to this script
gff3_sp_functional_statistics.pl
from the GAAS repository. You will end up with something like that. This one is a bit verbose (Functions come from interproscan analysis) compare to what you can get in your case.