Entering edit mode
5.0 years ago
zhangmengjie
•
0
[zhangmj@node28 ~]$ [zhangmj@node28 ~]$ [zhangmj@node28 ~]$ kmergenie /pub4/zhuy/Taxus/0.data/dealdata/IS350_*_trim.*.f q.gz -o ./result_haploid/haploid -l 15 -k 105 -s 10 -t 4 -e 200M > haploid.log1.txt
--one-pass skip the second pass to estimate k at 2 bp resolution (default: two passes)
-k <value> largest k-mer size to consider (default: 121)
-l <value> smallest k-mer size to consider (default: 15)
-s <value> interval between consecutive kmer sizes (default: 10)
-e <value> k-mer sampling value (default: auto-detected to use ~200 MB memory/thread)
-t <value> number of threads (default: number of cores minus one)
-o <prefix> prefix of the output files (default: histograms)
--debug developer output of R scripts
[zhangmj@node28 ~]$ result_haploid
-bash: result_haploid: command not found
what is the problem? Does anyone know?