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5.1 years ago
eng.sheren1975
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how can i use the probability with Hidden Markov to predict the Cp G islands in DNA sequence (source code with python)
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See this post from 'Biostars': Find Cpg Islands
Apply Hidden Markov Model (Hmm) On Tiling Array
A few other articles: 1)https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2883304/ Biostatistics. 2010 Jul; 11(3): 499–514. Redefining CpG islands using hidden Markov models Hao Wu, Brian Caffo, Harris A. Jaffee, and Rafael A. Irizarry*
2)https://github.com/devanshdalal/cpg-island-prediction-HMM Cpg-islands prediction in DNA Viterbi Algorithm Devansh Dalal Note: All the code is mainly implemented in Python. Finding CPGs islands in the sequence
3)https://ab.inf.uni-tuebingen.de/teaching/ss08/gbi/script/chapter08-hmms.pdf
4) And Stanford class as well: http://web.stanford.edu/class/stats366/exs/HMM1.html etc...