Entering edit mode
5.1 years ago
zizigolu
★
4.3k
Hi,
I am seeking RNA-seq raw read counts for Oesophageal adenocarcinoma
Here I am not seeing any OESO
https://www.synapse.org/#!Synapse:syn2812961
In this link I selected some OESO but I don't know how to download
And finally here https://confluence.broadinstitute.org/display/GDAC/Download
I need public RNA-seq raw read counts for this cancer especially some normal samples as I need normal sample to remove stromal contamination
Any help please?
How about: https://www.cbioportal.org/datasets. Here is a direct link but verify before you download.
Thank you so much looks the same I need but normalized one so for PCA and DE by DESeq2 I must convert normalized counts to raw counts
https://github.com/BioinformaticsFMRP/TCGAbiolinks/issues/302