Setting bins on whole Genome to take snapshots at SV possible positions

Question

[pyghost]

i want to set a bin size on the whole genome, Span through it and take snapshots on a region that could possibly be an SV region, i am new in this field and would be grateful for any help. thank you in advance.

[jean.elbers]

If I understand you correctly, you might want to take a picture of the read alignments like from a BAM file in the region of the a SV. If so, this could be done in IGV (http://software.broadinstitute.org/software/igv/)

[Pierre Lindenbaum]

see visualize CNV data based on WGS