Uploading of Genome to NCBI with unplaced scaffolds.
0
0
Entering edit mode
5.1 years ago
Shawrob400 ▴ 10

Hi, We uploaded our eukaryotic assembled genome to NCBI and assigned separately 29 chromosomes. And we have a few scaffolds unplaced. The option we choose is this.

ScreenshotOne or more chromosomes are still in multiple pieces and/or some sequences are not assembled into chromosomes

Are we in the right place? Thank You

Assembly genome • 902 views
ADD COMMENT
0
Entering edit mode

Don't know what the other options are but this one certainly sounds about right...

ADD REPLY
0
Entering edit mode

In some projects they put all left over together and create an unknown chromosome that is part of the chromosome assembly. Like that the submission is probably easier. Maybe the DBs didn’t provide any other solution in the past. I don’t know if doing in that way is still accepted.

ADD REPLY

Login before adding your answer.

Traffic: 1558 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6