I would like to carry-out pan-genome analysis of 3 different species genome, belongs to same genus. Most of the pan-genome analysis had been done intraspcies/same species genome. Therefore, is it a right way to carryout pan-genome analysis of interspecies/different species bacterial genome.
Thank you healey, I would like to use BPGA (Bacterial Pan Genome Analysis tool) and as you suggested, I would play with various thresholds for the same.