Visualize a Bam file as stack reads, not reduced, using Bioconductor
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5.2 years ago
gybazeta • 0

Hello, I am trying to produce a graphic in R (bioconductor) showing all reads stacked, not reduced, to a reference (Bam file). The reads need to be sorted by length in the right position with the reference. These are RNA long reads of one particular region. I can produced the graphic using programs like "tablet" but I need a png or svg graphic. Thanks

R next-gen • 1.0k views
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Completely off topic, but it sounds much like you try to program something that looks much like a screen shot of IGV

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Can you show an example?

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Maybe igvR?

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