WGCNA network Analysis

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5.2 years ago

biotechuos4 • 0

Hi Everyone,

I'm using WGCNA package in R. Before going in depth I'm a little confused about the nature of the data.

I want to ask if I am using GEO data what could be the nature of the data or TCGA data?

Can anyone please clarify this?

Thanks

WGCNA Network GEO TCGA R • 1.6k views

ADD COMMENT • link updated 5.2 years ago by zx8754 11k • written 5.2 years ago by biotechuos4 • 0

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Your question is unclear. Both GEO and TCGA contain next-generation-sequencing (mostly Illumina) and array-based data, such as whole-genome-sequencing, RNA-seq, methylation profiles, ChIP-seq etc. What do you mean by "nature" of the data?

ADD REPLY • link 5.2 years ago by ATpoint 81k

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Hi, what do you exactly mean with "nature of the data"? Do you mean if they are numerical? Please elaborate a bit more, as now for me it is not clear what you are asking.

ADD REPLY • link 5.2 years ago by Benn 8.3k

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Thank you very much for your reply. Actually, I want to know about the trait data, weight and also the raw input for the analysis. I was reading tutorials linked to WGCNA package and came to know about these terms.

ADD REPLY • link 5.2 years ago by biotechuos4 • 0

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You should just follow the tutorials, line by line, and then try to understand on your own. If you still have questions, then come back.

ADD REPLY • link 5.2 years ago by Kevin Blighe 87k

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