Question

GTEx for brain data

0

Entering edit mode

5.2 years ago

sana777munquad ▴ 10

How can I get brain tissue data from GTEx website.?Anyone can suggest me to solve this.

tissue • 1.6k views

ADD COMMENT • link updated 5.2 years ago by hubbardl • 0 • written 5.2 years ago by sana777munquad ▴ 10

1

Entering edit mode

Do you want the raw data (BAM/Fastq) ? or meta data about the samples used ? or eQTL results ? You have all the information on its website

ADD REPLY • link 5.2 years ago by GouthamAtla 12k

0

Entering edit mode

yes I want raw data of brain

ADD REPLY • link 5.2 years ago by sana777munquad ▴ 10

score 0 · Answer 1 · 2019-01-31

dbGaP by the sounds of it. From the GTEX site:

Due to the nature of our donor consent agreement, raw data and attributes which might be used to identify the donors are not publicly available on the GTEx Portal. You may apply for access to the data through dbGaP: https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000424.v7.p2

Data available include: BAM files for RNA-Seq, Whole Exome Seq, and Whole Genome Seq