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6.1 years ago
bhoomisharma04
▴
10
Hi. I am a newbie in the field of bioinformatics. I need to analyze the TCGA data. For that i have downloaded TCGA assembler . However, after loading module A and B , when i try to extract the data, it is continuously giving the error message: Error in fromJSON(jsn) : unexpected character 'c'. I am not sure of the reason behind this error. Please suggest how to rectify the problem.
Thanks in advance
Please paste the sequence of commands that you are using. Thank you!
Sorry for the late reply. Here's the set of commands i am using:
This is the error returning :
Hello.I'm a newbie too. I have the exact same problem, did you managed to figure it out? Because no one answered the post... Thanks in advance
Hi. I was using rstudio in windows. I couldn't resolve the problem. Then I switched to Ubuntu. TCGA -Assembler is working fine in the command line.
Can you paste your code such that we can have a reproducible example of the problem?
I just copied the first lines provided from the quickexample provided from TCGS-assembler folder
You mean THIS example?
Also, did you not try to contact either or both of the developers mentioned here: http://www.compgenome.org/TCGA-Assembler/
And this is what I get on the console