Question

GO network analysis

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5.4 years ago

shubhra.bhattacharya ▴ 140

Hi everyone! Does anyone know any tools and website to predict GO network given a set of genes. These genes belong to mitochondria if it is of any help.

Thanks in advance!

gene ontology • 1.9k views

ADD COMMENT • link updated 5.4 years ago by paolo002 ▴ 160 • written 5.4 years ago by shubhra.bhattacharya ▴ 140

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The GO network is fixed, so I understand you want some other type of network. What kind of network do you want? What type of information do you have?

ADD REPLY • link 5.4 years ago by Lluís R. ★ 1.2k

score 0 · Answer 1 · 2018-11-21

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5.4 years ago

paolo002 ▴ 160

if your question is how to build a GO network, first of all there are various good tools you can use for GO analysis such as DAVID, PANTHER, GOrilla and see what are the GO terms you get from your gene list. I would also suggest ClueGO package in CYTOSCAPE, you can build a nice network there.

ADD COMMENT • link 5.4 years ago by paolo002 ▴ 160

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Hey! Thanks for your reply. I already have the GO terms with me. I think ClueGO seems to be what I want. Thanks

ADD REPLY • link 5.4 years ago by shubhra.bhattacharya ▴ 140

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Any idea @palolo002 on how to get 30 day free trial for ClueGO?

ADD REPLY • link 5.4 years ago by shubhra.bhattacharya ▴ 140

score 0 · Answer 2 · 2018-11-25

Yeah, ClueGO is a very nice CYTOSCAPE plugin to build GO network and it is reliable because the GO terms I got from my RNA-seq data were correct. If I remember correctly you need to send them an email to get the activation code and then you can use ClueGO freely but not sure how does it work now because I activated mine quite some time ago already.