Off topic:Keep special character in a .txt file
1
0
Entering edit mode
5.4 years ago

Hi all,

I have a .txt file including three columns which based on column Annotation, i want to keep only rows including synonymous and missense. I will be grateful if you can help me to solve this problem.

CHROM_POS       ANN     Annotation
CM009840.1_932          A|intergenic_region|MODIFIER|CHR_START-LOC112587351|CHR_START-gene0|||  nongenic
CM009840.1_1096         T|intergenic_region|MODIFIER|CHR_START-LOC112587351|CHR_START-gene0||   nongenic
CM009840.1_4421500      A|missense_variant|MODERATE|LOC102415844|gene14  |1/1|c.298C>T|p.Ar||   missense
CM009840.1_4421553      A|missense_variant|MODERATE|LOC102415844|gene14|transcript|rna37|p ||    missense
CM009840.1_4421600      G|synonymous_variant|LOW|LOC102415844|gene14|transcript|rna37|protei ||   synonymous
CM009840.1_4421630      C|synonymous_variant|LOW|LOC102415844|gene14|transcript|rna37|pro||   synonymous
awk R • 623 views
ADD COMMENT
This thread is not open. No new answers may be added
Traffic: 2026 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6