tool for genome sequence manipulation

Question

[dentepre]

Hi, I;m looking for genome-browse like tool. I need to have a possiblity to load genome from fasta file, select region by adding primer sequences and add genes and rs... snps/another mutations. Mostly for clinical genomic purpose. I know IGV, but there is no way to add for example primers as separate track.

thanks d.

[lieven.sterck]

why would there not be any option to load primers?

IGV simply reads and displays every gff (or other format) data in a track.

Answer 1

[Brice Sarver]

Have you considered Geneious?

[GenoMax]

When you suggest a commercial/paid program it is useful to indicate that clearly. Majority of people are looking for free options and it can save them a few clicks.

[Brice Sarver]

When I was in grad school, Geneious had a free version that could handle fasta sequences and primers. Looks like this isn't the case anymore.

Answer 2

[oigl]

To work with an annotated genome you can use UGENE Sequence View.