Question

Can someone suggest the tool to Calculate Tumor Mutation Burden from VCF file

0

Entering edit mode

5.5 years ago

saranseth94 • 0

How to calculate TMB (Tumor Mutation Burden) from VCF file?. suggest some reliable tools

VCF tumor-mutational-burden R TMB • 4.9k views

ADD COMMENT • link updated 10 months ago by Ram 43k • written 5.5 years ago by saranseth94 • 0

0

Entering edit mode

There is a similar thread in Biostars, please go through it. TMB Tumor Mutation Burden

ADD REPLY • link 5.5 years ago by Arup Ghosh 3.2k

0

Entering edit mode

I can find no direct tools to calculate TMB only from VCF files.

ADD REPLY • link 5.5 years ago by saranseth94 • 0

score 0 · Answer 1 · 2021-06-04

0

Entering edit mode

2.9 years ago

petrosd • 0

Have you tried maftools ?

ADD COMMENT • link 2.9 years ago by petrosd • 0