Entering edit mode
5.6 years ago
salamandra
▴
550
I updated R to version 3.5 because I couldn't install package 'tibbles', but now the package I need the most 'DEseq2' is not installed. I tried to install with
source("https://bioconductor.org/biocLite.R")
biocLite()
biocLite("DESeq2")
and with
install.packages("DESeq2")
and is giving errors.
Warning: unable to access index for repository https://bioconductor.org/packages/3.2/bioc/bin/macosx/el-capitan/contrib/3.5:
cannot open URL 'https://bioconductor.org/packages/3.2/bioc/bin/macosx/el-capitan/contrib/3.5/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.2/data/annotation/bin/macosx/el-capitan/contrib/3.5:
cannot open URL 'https://bioconductor.org/packages/3.2/data/annotation/bin/macosx/el-capitan/contrib/3.5/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.2/data/experiment/bin/macosx/el-capitan/contrib/3.5:
cannot open URL 'https://bioconductor.org/packages/3.2/data/experiment/bin/macosx/el-capitan/contrib/3.5/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.2/extra/bin/macosx/el-capitan/contrib/3.5:
cannot open URL 'https://bioconductor.org/packages/3.2/extra/bin/macosx/el-capitan/contrib/3.5/PACKAGES'
Packages which are only available in source form, and may need compilation of
C/C++/Fortran: ‘genefilter’ ‘DESeq2’
How to solve this?