Catalogue of conserved CTCF ChIP-seq peaks/binding sites across mouse tissues?

Question

[andromeda]

Does there exist a BED file of CTCF ChIP-seq peaks that are conserved across different tissues in mice? ENCODE provides peaks for individual tissues, but I was wondering if anyone had already found common sites.

[Nitin Narwade]

You can do it by using bedtools or homer. Download all of the bed files for CTCF ChIP-Seq peaks of different tissues in mice from ENCODE and run the command as described on the bedtools/homer web page.

Answer 1

[kspata]

You can take a look at this link:

http://insulatordb.uthsc.edu/