Hi there,
I am working on some single-cell RNA-Seq samples and wondering what the difference between a typical RNA-Seq analysis and single-cell RNA-Seq analysis is? Can we use standard Subread and DESeq2 pipeline to work with the data?
Thank you very much,
Best wishes,
Tom
Hi, thanks for this.
I am just handling some SMART-Seq2 single-cell RNA-Seq datasets and it seems that it doesn't use UMI barcodes and its analysis pipeline is quite similar to that of bulk RNA-Seq. Is it true? If not, any differences?
Thanks,
Yes, SMART-Seq2 and other low-throughput methods are essentially the same as regular RNAseq.