I normally use the following link to download ENCODE data.
https://www.encodeproject.org/files/{acc}/@@download/{acc}.fastq.gz
Using the online data selector is certainly one way to figure out the {acc}
, but I'm wondering if I'm missing an easier way to batch download wanted data from ENCODE.
The .tsv provided by ENCODE has all the information I need to select wanted data, from experiments, assay types, species, etc, but I can't find anything that I can use to convert into accession ids.
Any advice?