CWL DockerRequirements and -volume destination

Question

[ngoc.nguyen]

Hello, I'm new to CWL and have been playing with it for a few weeks, I need to mount a volume to "/data" destination in the docker container. Is it possible to do it and how? Thanks, Ngoc

Answer 1

[Michael R. Crusoe]

Hello ngoc.nguyen,

In CWL the input data is mounted to a one or more paths of the CWL implementations choice inside the container. These paths are then available via inputBinding or CWL parameter references in arguments to be given to your tool.

https://www.commonwl.org/v1.0/CommandLineTool.html#Parameter_references