GC count calculation of thousnds genes in several region

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6.0 years ago

Kian ▴ 50

Hi I have a list of more than 1000 genes, i want to calculate GC count of these genes in several region, like in exone, intron, 3utr, 5utr, upstream, downstream. and comparison them about different in gc count. Any one know how i can do this calculation in simple and fastest way!

GC GC COUNT gene calculation • 1.7k views

ADD COMMENT • link 6.0 years ago by Kian ▴ 50

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How To Calculate A Region‘ Gc Content In Reference Genome？？

ADD REPLY • link 6.0 years ago by GenoMax 141k

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Also one from Aaron Quinlan, BEDTools developer: Calculating Gc Content For All Ccds

ADD REPLY • link 6.0 years ago by Kevin Blighe 87k

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geecee from EMBOSS also perfectly works for this purpose.

ADD REPLY • link 6.0 years ago by Sishuo Wang ▴ 230

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Thanks, Sishuo Wang, would you please paste the link of this tool here?

ADD REPLY • link 6.0 years ago by Kian ▴ 50

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EMBOSS geecee.

ADD REPLY • link 6.0 years ago by GenoMax 141k

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