Closed:Need help in selecting the correct output file from miRDeep2?

Question

[bioinforesearchquestions]

Hi friends,

We sequenced miRNA from 12 pig samples. I did the analysis using miRDeep2 tool.

My aim is to find isomiRs for each sample.

I got the following folders and files

Which read count should I use miRBase.mrd or output.mrd? I got the following folders and files

1) miRDeep2_output/dir_prepare_signature1345475348 (contains .fa, .arf, .bwt and .ebwt)

2) miRDeep2_output/expression_analyses/expression_analyses_04_03_2018_t_07_26_27

• miRBase.mrd

• miRNA_expressed.csv

3) miRNAs_expressed_all_samples_04_03_2018_t_07_26_27.csv

4) miRDeep2_output/mirdeep_runs/run_04_03_2018_t_07_26_27/

• output.mrd