Question

TUTORIALS about Hi-C data analysis

2

Entering edit mode

8.1 years ago

shiningstarbzu ▴ 20

Can anybody guide me to find “TUTORIALS” about Hi-C data analysis so that I may be able to analyze Hi-C data independently? Thanks

genome • 7.5k views

ADD COMMENT • link updated 5.5 years ago by Adeel • 0 • written 8.1 years ago by shiningstarbzu ▴ 20

0

Entering edit mode

HiFive : http://genomebiology.biomedcentral.com/articles/10.1186/s13059-015-0806-y Its an open source tool.

ADD REPLY • link 8.1 years ago by #### ▴ 220

0

Entering edit mode

sorry for the delayed reply, yes @Dogancan I have Raw data (.fastq).

ADD REPLY • link 5.5 years ago by Adeel • 0

score 2 · Answer 1 · 2016-03-01

2

Entering edit mode

8.1 years ago

Czh3 ▴ 190

homer hicup

ADD COMMENT • link 8.1 years ago by Czh3 ▴ 190

score 2 · Answer 2 · 2017-01-10

2

Entering edit mode

7.3 years ago

Fidel ★ 2.0k

You can use HiCExplorer, here is a tutorial: http://hicexplorer.readthedocs.io/en/latest/content/example_usage.html

ADD COMMENT • link 7.3 years ago by Fidel ★ 2.0k

score 2 · Answer 3 · 2018-03-28

2

Entering edit mode

6.1 years ago

Dogancan ▴ 30

HiC-Pro documentation is pretty thorough.

ADD COMMENT • link 6.1 years ago by Dogancan ▴ 30

0

Entering edit mode

@Dogancan hope you will be good, thanks for mentioning HiC-Pro for Hic data analysis. i am trying this pipeline, but i could not get enough understanding how to start it because i am quite new to computational genomics ! Can you please share some comprehensive notes or step by step list of commands? Yeah , i have gone through its manual, i have data from Arabidopsis, i don't know how to incorporate my data into it. Thank you.