how to parse raw reads to unique reads with count for fast alignment

Question

[manishbiotechie]

i want to parse raw reads to unique reads with count for fast alignment for use in mirdp. suggest some pipelines except mapper.pl

[WouterDeCoster]

Hi manishbiotechie,

This question needs more information. Please elaborate on which data you have and what you aim to achieve.

Regards,
Wouter

Answer 1

[Malcolm.Cook]

see FASTQ/A Collapser

Collapsing identical sequences in a FASTQ/A file into a single sequence (while maintaining reads counts)