Question

expression Quantitative trait loci

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6.5 years ago

himadriiasri • 0

Currently expression QTL is a burning topic. But main constrain is availability of data sets. I am looking for agricultural crops. Is there any one who has expression and genotype data sets ?

SNP next-gen • 1.2k views

ADD COMMENT • link updated 6.5 years ago by Kevin Blighe 87k • written 6.5 years ago by himadriiasri • 0

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Please choose an appropriate and specific title for your question. You are not looking for eQTL - but you need data.

ADD REPLY • link 6.5 years ago by WouterDeCoster 47k

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Water on a burning topic.

ADD REPLY • link 6.5 years ago by theobroma22 ★ 1.2k

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It may be better for you to contact a lab of your interest?

ADD REPLY • link 6.5 years ago by theobroma22 ★ 1.2k

score 0 · Answer 1 · 2017-10-13

Hey, I think that you just have to know the right places to look. I started with ArrayExpress, one of the greatest data-hosting websites, and have already found numerous eQTL studies on crops / agriculture:

eqtl-Identification of expression QTL of ABA response in sunflower
EXPRESSION QTL MAPPING ACROSS SOIL MOISTURE ENVIRONMENTS REVEALS CONTRASTING ASSOCIATIONS WITH GENOMIC FEATURES IN ARABIDOPSIS THALIANA
Transcription profiling by array of barley parental and near-isogenic lines in response to Puccinia hordei infection

There were more than those which I have posted here. Hopefully each study does indeed provide both the expression and genotyping data.

Kevin