KEGG database query

Question

[sharmatina189059]

Dear all I have 1900 KEGG KO Ids like K03821, k21699 and so on . I have retrieved it for my genome using BLASTKoala. I want to retrieve corresponding pathway name, substrate, product, enzyme name, enzyme class, interacting pathways, reaction type and source.

please let me know how to use kegg api for this purpose or using some per or bioperl code.

Answer 1

[Pierre Lindenbaum]

using togogws:

 for A in K03821 K21699 ; do wget -q -O - "http://togows.org/entry/kegg-orthology/${A}/pathways" | sed "s/\$/ ${A}/" ; done

ko00650  Butanoate metabolism K03821

[sharmatina189059]

Thanks for sending your reply. It really works but what if I have a file of 1900 KO. How to use multiple KO for this purpose.

[sharmatina189059]

And why single KO ID gives multiple pathway name?

[Pierre Lindenbaum]

cat yourfile | while read A ; do wget ....

??

[sharmatina189059]

Really thanks it works..thankyou so much

[Pierre Lindenbaum]

Click on the pale green check mark on the left to validate+close please.