pathway analysis tools

Question

[gracie]

Hi,

I looking for tools for the pathway analysis; upstream and downstream analysis and/or pathway enrichment for high-throughput data similar to ingunity pathway analysis. It doesn't have to be freeware yet I want more comprehensive tool especially suitable for miRNA analysis.

Answer 1

[elsayedhegazy]

If you have the target genes you can use DAVID -- https://david.ncifcrf.gov/

or

FunRich -- http://www.funrich.org/

If not you can get the target genes using mirWalk2 -- http://zmf.umm.uni-heidelberg.de/apps/zmf/mirwalk2/miRretsys-self.html

Regards elsayed

Answer 2

[Denise CS]

These are some I've come across with: OminPath with a Python module, Reactome and GSEA.