Question

What is the difference between hg19 v9 vs hg19

0

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6.6 years ago

bxia ▴ 180

I saw some encode data has processed file with hg19 v9 and hg19.

What is the difference?

RNA-Seq • 1.5k views

ADD COMMENT • link updated 6.6 years ago by Denise CS ★ 5.2k • written 6.6 years ago by bxia ▴ 180

score 1 · Answer 1 · 2017-09-12

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6.6 years ago

Denise CS ★ 5.2k

v9 corresponds to GENCODE Version 9 of HG19 (=GRCh37), May 2011 data freeze. GENCODE is the set of annotated genes and transcripts for ENCODE and other projects. The annotation is/was ongoing, hence the different versions. For HG19, the last GENCODE version was 19, July 2013 data freeze.

ADD COMMENT • link 6.6 years ago by Denise CS ★ 5.2k