Entering edit mode
6.6 years ago
anuprabha.mandal
•
0
I have a fasta sequence file with multiple protein entries. I want to find out which PFam domains do each of the sequence belong to along with the domain boundaries (in text format preferably for parsing). I have tried Batch PFam web search tool however it is taking way longer than usual. i have many such files and need to use it on a regular basis. Please help.
Download PfamScan from ftp://ftp.ebi.ac.uk/pub/databases/Pfam/Tools/ and use it from the command-line.