Question

Looking for small RNA-seq in single cell

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6.7 years ago

jack ▴ 960

Hey,

I'm looking database that contains small RNA-seq for single cell. Is there any resource to download single cell small RNA-seq ?

RNA-Seq genome sequencing • 2.4k views

ADD COMMENT • link updated 6.7 years ago by EagleEye 7.5k • written 6.7 years ago by jack ▴ 960

score 1 · Answer 1 · 2017-08-17

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6.7 years ago

aka001 ▴ 190

I don't think such database currently exists, given the fact that (one of) the method paper(s) (Single-cell sequencing of the small-RNA transcriptome) was just published quite recently. Looking at that, I would say such database will be there in a year or two in the best case.

ADD COMMENT • link 6.7 years ago by aka001 ▴ 190

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Also it would highly depend on what kind of cells you want, which organism, etc. It is most probably still years from now.

ADD REPLY • link 6.7 years ago by aka001 ▴ 190

score 0 · Answer 2 · 2017-08-18

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6.7 years ago

EagleEye 7.5k

These are ENCODE small RNA-seq dataset.

ADD COMMENT • link 6.7 years ago by EagleEye 7.5k

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Unclear if any are single-cell but at least there are examples of cell types.

ADD REPLY • link 6.7 years ago by GenoMax 141k