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snp detection for RNA SEQ
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14 months ago

what is the best tools for SNP detection for RNA SEQ data?and how to convert bam.bai files into bam file?

RNA-Seq • 587 views
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an example GATK best practices workflow for variant calling in RNAseq data, using bpipe: https://digibio.blogspot.in/2015/07/variant-calling-in-rna-seq-and-bpipe.html

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14 months ago
Belgium

what is the best tools for SNP detection for RNA SEQ data?

Have a look at GATK Best Practices for variant calling on RNAseq

and how to convert bam.bai files into bam file?

You can't. A .bai file is an index of a bam file and doesn't contain the same information.

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14 months ago
Lila M • 470
UK

You can also have a look to other post with lot of information as Workflow Or Tutorial For Snp Calling?

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