Entering edit mode
6.7 years ago
BAGeno
▴
190
Hi,
I want to extract SNPs from vcf based on list of rsids. From this I used command
vcftools --vcf <vcf_file> --snps <rsID_filename> --recode --recode-INFO-all
But it is giving me error.
stat error: No such file or directory
Error: Can't determine file type of --recode-INFO-all
Please tell me how to correct it.
this cannot be the command you used. This is just the synopsis. What is the command you typed in the terminal.
This is the command I typed on terminal.
I would say you have no idea of what you're doing :-) Please read h.mon's answer and read about linux I/O redirection : https://www.digitalocean.com/community/tutorials/an-introduction-to-linux-i-o-redirection
I took command from here. Retrieve Single Vcf From List Of Snp Rs#