Hi,
I would like to ask some question about RepeatMasker Tool. If i want to know the list of species in these tool and choose species. In the parameter of this tool (as -species ......). So I want to mask repeat fungi, If someone have some suggestion please answer me. Thank you for advance.
For now, I use this command : ./RepeatMasker -species fungi filename.fasta
and about information of my organism is Eukaryote, fungi, ascomycete, Xylaria ,respectively
Hi Medhat: How can I check which rodent species are in the rodent repeat library. I know we can select mouse and rat for "-species", I want to see whether there are other rodent species (e.g., naked mole rat, guinea pig).
Thanks
you can use
perl queryTaxonomyDatabase.pl -species "guinea"
It will give you:
other way is to search this file
repeatmasker/RepeatMasker/Libraries/taxonomy.dat