Question

Pathway analysis for miRNAs

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7.6 years ago

Grunir112 ▴ 10

Where I can do biological pathway analysis for pathways regulated by miRNAs? I have the list of miRNAs from bioinformatics pipeline and I would like to know their biological pathways. I tried to use DIANA tool, but it is very slow and just loading and loading. I also tried to use ingenuity.com but it require registration and it is asking so many information.

RNA-Seq gene • 2.1k views

ADD COMMENT • link updated 7.6 years ago by Thomas ▴ 160 • written 7.6 years ago by Grunir112 ▴ 10

score 0 · Answer 1 · 2016-09-19

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7.6 years ago

andrew.j.skelton73 6.5k

MirPath

ADD COMMENT • link 7.6 years ago by andrew.j.skelton73 6.5k

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I tried MirPath (Diana tool), it does not work properly. I add one miRNA and it has been loading two hours...

ADD REPLY • link 7.6 years ago by Grunir112 ▴ 10

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Edited to include the latest version, the previous link was the deprecated site

ADD REPLY • link 7.6 years ago by andrew.j.skelton73 6.5k

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Thank you. Now it works

ADD REPLY • link 7.6 years ago by Grunir112 ▴ 10

score 0 · Answer 2 · 2016-09-19

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7.6 years ago

Thomas ▴ 160

Try miTalos2 - which may be appropriate depending on the data that you are working with.

http://mips.helmholtz-muenchen.de/mitalos/#/search

ADD COMMENT • link 7.6 years ago by Thomas ▴ 160

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Thank you for the link.

ADD REPLY • link 7.6 years ago by Grunir112 ▴ 10