GASVProcc execution help

Question

[sukesh1411]

Hi

I tried to execute GASVProCC to find the structural variants in .bam file using the following command.

./GASVPro-CC sortuniq.bam_all.concordant sortuniq.bam.gasv.in.clusters

I get the following output:

Step 0: Setting up to run. |||INPUT PARAMETERS||| Parameters file found. |||INPUT PARAMETERS||| Checking for input errors... ERROR: Lavg must be positive

Can anyone help me how to pass Lavg values in the command. By default Lavg values must be positive . I tried to follow the software usage but i could not execute this command.

[Zev.Kronenberg]

If you're interested in trying another SV caller https://github.com/zeeev/wham (shameless plug).