Java api or library to calculate hydrogen bonds of a protein

Question

[m.taheri]

Hello every body.

I need a Java api or library for calculating hydrogen bonds of a given pdb file. Even a Web Service that calculates hydrogen bonds like this can be useful, because i need to call it from the program i am writing with Java.

Thanks a lot.

Answer 1

[Dan D]

It will take a little bit of additional coding, but BioJava has a robust PDB Reader and plenty of classes for protein composition and structure.

Classes/Interfaces of interest for this specific application:

• Structure
• PDBReader
• FileParsingParameters