Entering edit mode
8.4 years ago
sbilobram
▴
20
Besides GATK, Pindel and Dindel are there any other recommended tools to call somatic indels less than 1000bp?
I know this question has been asked many times and I have seen the posts to the thread:
Question: Best Software For Detection Of Somatic Mutations From Matched Tumor:Normal Ngs Data
But that is 3 years old ...so looking for up-to-date consensus
If your question has been asked before, so why didn't you add a new comment or answer there? The question the pops up at Biostars beginning.
This way it is much simpler to keep track of updates. If in three year from now on somebody searches for an small indel caller he will probably find the old question, he will read it, and thinks "Boy, this question is already six years old. Maybe I should ask for an up-to-date consensus". But he will likely not be aware of the discussion here... just think about it. ;-)