Question

Ensembl ID gene length GC content

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8.6 years ago

cwhitfield • 0

Hi - Is there a way to get a list of ensembl ID, gene length (transcript length) and GC content.

Thanks

RNA-Seq ensembl • 4.5k views

ADD COMMENT • link updated 19 months ago by Ram 43k • written 8.6 years ago by cwhitfield • 0

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Thank you, This is great!

ADD REPLY • link 8.6 years ago by cwhitfield • 0

Ram · Answer 1 · 2015-09-25

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8.6 years ago

Devon Ryan 104k

I wrote some code in R to do that a while back. You're free to just modify it to fit your needs.

ADD COMMENT • link 8.6 years ago by Devon Ryan 104k

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Alternatively, BioMart gives you GC content and transcript length.

ADD REPLY • link updated 19 months ago by Ram 43k • written 8.6 years ago by Ashutosh Pandey 12k